Publication Ecosystem

Publications

Publications are designed as research portals rather than a citation dump. BibTeX can populate metadata while manually authored sections provide context and scientific interpretation.

Highlighted Publications
Figure from BRACE-ing for the future: Establishing iPad-based norms for cognitive function in the MACS/WIHS Combined Cohort Study (Preprint)
2025 article highlighted

BRACE-ing for the future: Establishing iPad-based norms for cognitive function in the MACS/WIHS Combined Cohort Study (Preprint)

Rubin, Leah et al.

JMIR mental health

Establishes regression-based iPad cognitive norms for BRACE in the MACS/WIHS Combined Cohort Study.

Publication preview for Identifying and distinguishing cognitive profiles among virally suppressed people with HIV.
2024 article highlighted

Identifying and distinguishing cognitive profiles among virally suppressed people with HIV.

Sundermann, Erin E et al.

Neuropsychology

Identifies six cognitive profiles among virally suppressed people with HIV and the factors that distinguish them.

Figure from Machine learning approaches to understand cognitive phenotypes in people with HIV
2023 article highlighted

Machine learning approaches to understand cognitive phenotypes in people with HIV

Mukerji, Shibani S et al.

The Journal of infectious diseases

Frames machine learning as a tool for discovering cognitive biotypes in people with HIV.

Figure from MEAnalyzer-a spike train analysis tool for multi electrode arrays
2020 article highlighted

MEAnalyzer-a spike train analysis tool for multi electrode arrays

Dastgheyb, Raha M et al.

Neuroinformatics

Introduces MEAnalyzer as reproducible software for spike train analysis in multi-electrode array experiments.

Figure from Blood-Brain barrier disruption in long COVID and cognitive correlates: A cross-sectional MRI study
2025 article highlighted

Blood-Brain barrier disruption in long COVID and cognitive correlates: A cross-sectional MRI study

Rubin, Leah H et al.

Brain, Behavior, and Immunity

Uses non-contrast MRI to study blood-brain barrier permeability and cognition in Long COVID.

Figure from The Baltimore declaration toward the exploration of organoid intelligence
2023 article highlighted

The Baltimore declaration toward the exploration of organoid intelligence

Hartung, Thomas et al.

Frontiers in Science

Defines organoid intelligence as an emerging discipline requiring technical, ethical, and community infrastructure.

Figure from Patterns and predictors of cognitive function among virally suppressed women with HIV
2021 article highlighted

Patterns and predictors of cognitive function among virally suppressed women with HIV

Dastgheyb, Raha M et al.

Frontiers in neurology

Uses self-organizing maps and random forests to characterize cognitive profiles in virally suppressed women with HIV.

Figure from Metabolomic levels mediate the link between socioeconomic factors and changes in declarative memory in women with and without HIV
2026 article highlighted

Metabolomic levels mediate the link between socioeconomic factors and changes in declarative memory in women with and without HIV

Tejera, C\'esar Higgins et al.

Brain, Behavior, & Immunity-Health

Links socioeconomic conditions, metabolomic profiles, and longitudinal declarative memory change in women with and without HIV.

Figure from Longitudinal effects of polypharmacy on cognitive function in people with HIV
2026 article highlighted

Longitudinal effects of polypharmacy on cognitive function in people with HIV

Korpela, Eero et al.

AIDS

Examines how polypharmacy relates to cognitive function over time in people with HIV.

Figure from Tryptophan-Kynurenine Pathway Activation and Cognition in Virally Suppressed Women With HIV
2024 article highlighted

Tryptophan-Kynurenine Pathway Activation and Cognition in Virally Suppressed Women With HIV

Shorer, Eran Frank et al.

JAIDS Journal of Acquired Immune Deficiency Syndromes

Studies whether tryptophan-kynurenine pathway activation is associated with cognition in virally suppressed women with HIV.

Selected Publications
Figure from Plasma neurofilament light chain and glial fibrillary acidic protein as biomarkers of cognitive decline in people with human immunodeficiency virus
2025 article selected

Plasma neurofilament light chain and glial fibrillary acidic protein as biomarkers of cognitive decline in people with human immunodeficiency virus

Mukerji, Shibani S et al.

The Journal of Infectious Diseases

This paper helps define a research thread in translational brain health research, providing context for how computational and translational evidence can be organized into reusable scientific systems.

Figure from Mental health phenotypes of well-controlled HIV in Uganda
2025 article selected

Mental health phenotypes of well-controlled HIV in Uganda

Rubin, Leah H et al.

Frontiers in Public Health

This paper helps define a research thread in computational phenotyping and cognitive subgroup discovery, providing context for how computational and translational evidence can be organized into reusable scientific systems.

Figure from International application of an optimized harmonization approach for longitudinal cognitive data in people with HIV
2025 article selected

International application of an optimized harmonization approach for longitudinal cognitive data in people with HIV

Lang, Lang et al.

Journal of Clinical Epidemiology

This paper helps define a research thread in translational brain health research, providing context for how computational and translational evidence can be organized into reusable scientific systems.

Publication preview for Development of a refined harmonization approach for longitudinal cognitive data in people with HIV
2025 article selected

Development of a refined harmonization approach for longitudinal cognitive data in people with HIV

Lang, Lang et al.

Journal of Clinical Epidemiology

This paper helps define a research thread in translational brain health research, providing context for how computational and translational evidence can be organized into reusable scientific systems.

Figure from Cognitive predictors of everyday functioning in women with HIV: findings from the women’s interagency HIV study
2025 article selected

Cognitive predictors of everyday functioning in women with HIV: findings from the women’s interagency HIV study

Vance, David E et al.

BMC neurology

This paper helps define a research thread in translational brain health research, providing context for how computational and translational evidence can be organized into reusable scientific systems.

Publication preview for Cognitive Predictors of Everyday Functioning in Older Virally Suppressed Women with HIV in the Women’s Interagency HIV Study
2025 article selected

Cognitive Predictors of Everyday Functioning in Older Virally Suppressed Women with HIV in the Women’s Interagency HIV Study

Vance, David E et al.

Research square

This paper helps define a research thread in translational brain health research, providing context for how computational and translational evidence can be organized into reusable scientific systems.

Figure from Biopsychosocial phenotypes in people with HIV in the CHARTER cohort
2024 article selected

Biopsychosocial phenotypes in people with HIV in the CHARTER cohort

Tang, Bin et al.

Brain Communications

This paper helps define a research thread in computational phenotyping and cognitive subgroup discovery, providing context for how computational and translational evidence can be organized into reusable scientific systems.

Figure from Sex differences in the patterns and predictors of cognitive function in HIV
2020 article selected

Sex differences in the patterns and predictors of cognitive function in HIV

Rubin, Leah H et al.

Frontiers in Neurology

This paper helps define a research thread in translational brain health research, providing context for how computational and translational evidence can be organized into reusable scientific systems.

Archive
2026 Stability of the translocator protein 18 kDa density within cognitive circuits in brains of virally-suppressed people with HIV AIDS 2026 Parkinsonism in people with virally suppressed HIV The Lancet HIV 2026 N-acetyl-aspartyl-glutamate connects neuroinflammatory signatures to attention and working memory in people with HIV AIDS 2026 Cognitive sequala of loneliness in long COVID: Differential associations by loneliness subtypes Journal of Affective Disorders 2026 Beyond accuracy: facial emotion perception bias in people with HIV in Uganda Journal of neurovirology 2025 The cerebrospinal fluid virome in people with HIV: links to neuroinflammation and cognition Frontiers in Microbiology 2025 Systemic inflammation and Its impact on comorbidities in people with HIV (PWH)(P8-10.001) Neurology 2025 Putting the PASC Score to the Test: Clinical vs. Statistical Accuracy in Long COVID Diagnosis: Azola et al. Journal of general internal medicine 2025 Neuropathologic findings in a community-based autopsy cohort of older, virally suppressed, people with HIV Journal of Neuropathology & Experimental Neurology 2025 Multiplexing Proteomic and Ingenuity Pathway Analysis of Attention/Working Memory in Virally Suppressed Women with HIV: A Feasibility Study Diagnostics 2025 Metabolic changes mediate the link between social determinants and declarative memory in women with and without HIV Alzheimer's & Dementia 2025 Loneliness is related to facial emotion perception in people with HIV Scientific reports 2025 Intact HIV reservoir in monocytes is associated with cognitive function in virally suppressed women with HIV The Journal of Infectious Diseases 2025 Imaging the translocator protein 18 KDa within cognitive control and declarative memory circuits in virally suppressed people with HIV AIDS 2025 Associations Between Specific IADLs And Objective Cognitive Performance In Older Women With HIV Innovation in Aging 2025 Association Between Loneliness Subtypes and Brain Volume in Older Adults With HIV Innovation in Aging 2025 Alzheimer's Imaging Consortium Alzheimer's & dementia: the journal of the Alzheimer's Association 2025 Altered development and network connectivity in a human neuronal model of 15q11. 2 deletion-related neurodevelopmental disorders Translational psychiatry 2024 Tryptophan-kynurenine metabolic pathway and daytime dysfunction in women with HIV Journal of neurovirology 2024 Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro Journal of neuroscience methods 2024 Emotional Loneliness Is Related to Objective Cognitive Function in Older People With HIV in the Washington-Baltimore Area: A Cross-sectional Study Journal of the Association of Nurses in AIDS Care 2024 Does cognitive intra-individual variability predict change in everyday functioning performance in women with and without HIV in the Women’s Interagency HIV Study? Applied Neuropsychology: Adult 2024 Common antiretroviral combinations are associated with somatic depressive symptoms in women with HIV AIDS 2024 Brain N-acetyl-aspartyl-glutamate is associated with cognitive function in older virally suppressed people with HIV Aids 2023 Tryptophan-Kynurenine Metabolic Pathway and Daytime Dysfunction in Women Living With HIV JOURNAL OF NEUROVIROLOGY 2023 Trauma across the life span and multisystem morbidity in women with HIV Biopsychosocial Science and Medicine 2023 Pilot imaging of the colony stimulating factor 1 receptor in the brains of virally-suppressed individuals with HIV Aids 2023 Integrase inhibitors are associated with neuropsychiatric symptoms in women with HIV Journal of Neuroimmune Pharmacology 2023 Intact HIV genomes within monocytes are associated with cognitive function in virally suppressed women with HIV JOURNAL OF NEUROVIROLOGY 2023 First Organoid Intelligence (OI) workshop to form an OI community Frontiers in artificial intelligence 2023 Brain N-Acetyl-Aspartyl-Glutamate (NAAG) is Associated With Cognitive Function in Virally-Suppressed People With HIV NEUROPSYCHOPHARMACOLOGY 2023 Brain N-acetyl-aspartyl-glutamate (NAAG) is associated with cognitive function in virally-suppressed people living with HIV JOURNAL OF NEUROVIROLOGY 2022 Tumor-derived extracellular vesicles modulate innate immune responses to affect tumor progression Frontiers in immunology 2022 T-cell activation state differentially contributes to neuropsychiatric complications in women with HIV Brain, behavior, & immunity-health 2022 Cx43 hemichannels contribute to astrocyte-mediated toxicity in sporadic and familial ALS Proceedings of the National Academy of Sciences 2022 Associations between cerebrospinal fluid N-acetyl-aspartyl-glutamate (NAAG) and cognitive function in people with HIV AIDS 2021 Starting or switching to an integrase inhibitor-based regimen affects PTSD symptoms in women with HIV AIDS and Behavior 2021 Plasma microRNAs are associated with domain-specific cognitive function in people with HIV AIDS 2021 Integrase strand transfer inhibitor start or switch impacts learning in women with HIV JAIDS Journal of Acquired Immune Deficiency Syndromes 2021 Dietary intake is associated with neuropsychological impairment in women with HIV The American Journal of Clinical Nutrition 2021 Associations between antiretrovirals and cognitive function in women with HIV Journal of Neuroimmune Pharmacology 2021 Associations between antiretroviral drugs on depressive symptomatology in homogenous subgroups of women with HIV Journal of neuroimmune pharmacology 2020 Monocarboxylate transporter 1 in Schwann cells contributes to maintenance of sensory nerve myelination during aging Glia 2020 Modeling the Human Corticospinal Tract-on-a-chip with Regionally-specific hiPSC-derived Neurons and Astrocytes (4811) Neurology 2020 Factors predicting detrimental change in declarative memory among women with HIV: A study of heterogeneity in cognition Frontiers in psychology 2020 Early inflammatory signatures predict subsequent cognition in long-term virally suppressed women with HIV Frontiers in Integrative Neuroscience 2020 Connexin 43 hemichannels mediate spatial and temporal disease spread in ALS BioRxiv 2020 Astrocytes deliver CK1 to neurons via extracellular vesicles in response to inflammation promoting the translation and amyloidogenic processing of APP Journal of Extracellular Vesicles 2019 Role of human-induced pluripotent stem cell-derived spinal cord astrocytes in the functional maturation of motor neurons in a multielectrode array system Stem Cells Translational Medicine 2019 Neurocognitive Profiles Among Virally Suppressed Women with HIV JOURNAL OF NEUROVIROLOGY 2019 Multielectrode array analysis of human iPSC-motor neuron maturation following coculture with iPSC-spinal cord astrocytes (P4. 4-031) Neurology 2019 Monocarboxylate transporter 1 in Schwann cells is critical for maintenance of sensory nerve myelination during aging BioRxiv 2019 Molecularly defined cortical astroglia subpopulation modulates neurons via secretion of Norrin Nature neuroscience 2019 Molecularly defined cortical astroglia subpopulation modulates neurons via secretion of Norrin GLIA 2019 Modulation of neuronal dendritic spine morphology and function by astrocyte derived extracellular vesicles following morphine withdrawal JOURNAL OF NEUROVIROLOGY 2019 Loss of function variants in PCYT1A causing spondylometaphyseal dysplasia with cone/rod dystrophy have broad consequences on lipid metabolism, chondrocyte differentiation, and lipid droplet formation bioRxiv 2019 Lipidomic characterization of extracellular vesicles in human serum Journal of circulating biomarkers 2019 Heterogeneity in neurocognitive change trajectories among people with HIV starting antiretroviral therapy in Rakai, Uganda Journal of neurovirology 2019 Elevated plasma eicosanoids are associated HIV-disease status and working memory in people living with HIV JOURNAL OF NEUROVIROLOGY 2019 Cognitive trajectory phenotypes in human immunodeficiency virus-infected patients JAIDS Journal of Acquired Immune Deficiency Syndromes 2019 Associations between antiretroviral drugs on depressive symptomatology in homogenous subgroups of women with HIV JOURNAL OF NEUROVIROLOGY 2019 15q11. 2 Deletion Results in Altered Excitability and Connectivity in Human Induced Pluripotent Stem Cell Derived Neurons (S51. 009) Neurology 2018 TNFalpha and IL-1beta modify the miRNA cargo of astrocyte shed extracellular vesicles to regulate neurotrophic signaling in neurons Cell death & disease 2018 Machine learning interrogation of clinical and plasma markers identify prognostic models for cognitive trajectory JOURNAL OF NEUROIMMUNE PHARMACOLOGY 2017 Exosomes released from astrocytes in response to morphine and inflammatory cytokines deconstruct synaptic connections through modulation of microRNA cargo JOURNAL OF NEUROIMMUNE PHARMACOLOGY 2016 Astrocyte-shed extracellular vesicles regulate synchronous network burst activity JOURNAL OF NEUROVIROLOGY 2015 Quantifying focal disruptions in axonal microtubules 2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC) 2015 Investigating sources of axonal calcium in neuronal cultures modeling Traumatic Brain Injury 2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC) 2014 The role of intracellular calcium in axonal injury 2014 40th Annual Northeast Bioengineering Conference (NEBEC) 2014 SECONDARY MEMBRANE DAMAGE AND THE POTEN-TIAL FOR MEMBRANE-TARGETED NEUROPROTECTION JOURNAL OF NEUROTRAUMA 2014 Mechanisms of axonal pathology in the context of traumatic brain injury Drexel University 2012 Interactions of fluorescein isothiocyanate-labeled poloxamer P188 with cultured cells 2012 38th Annual Northeast Bioengineering Conference (NEBEC) 2011 Quantification of beading intensity in cultured neurons 2011 IEEE 37th Annual Northeast Bioengineering Conference (NEBEC) 2005 Pulmonary hypertension in Chuvash polycythemia Ethnicity & Disease TNFalpha and IL-1beta modify the miRNA cargo of astrocyte shed extracellular vesicles to regulate neurotrophic signaling in neurons. Cell Death Dis. 2018; 9 (3): 363