Highlighted Publication

Machine learning approaches to understand cognitive phenotypes in people with HIV

2023 The Journal of infectious diseases article

Mukerji, Shibani S, Petersen, Kalen J, Pohl, Kilian M, Dastgheyb, Raha M, Fox, Howard S, Bilder, Robert M, Brouillette, Marie-Jos\'ee, Gross, Alden L, and 3 others

Figure from Machine learning approaches to understand cognitive phenotypes in people with HIV
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Why This Matters

This review is a field-building paper. It explains why cognitive disorders in people with HIV should not be treated as a single uniform outcome, and it lays out what machine learning can and cannot do for cognitive phenotyping. Its value is in connecting methodological choices to the infrastructure the field needs: harmonized data, meaningful metadata, careful confound handling, external validation, and interdisciplinary interpretation.

Key Findings
  • The paper reviews machine learning approaches for identifying cognitive phenotypes and biotypes in people with HIV.
  • It emphasizes the Research Domain Criteria framework as a way to study mechanisms that cut across traditional diagnostic categories.
  • The review highlights the need for common data elements, high-quality longitudinal cohorts, and harmonization across studies.
  • It argues that validation, interpretability, and handling of confounds are essential before machine-learning models can inform clinical management.
  • The paper positions cognitive phenotyping as a collaborative problem spanning neuropsychology, infectious disease, data science, and computational modeling.
Plain-Language Summary

People with HIV can experience different patterns of cognitive change, and those patterns may have different causes. This paper explains how machine learning can help find those patterns, while also warning that algorithms are only useful when the data are well measured, harmonized, and validated. It is less a single-model paper than a roadmap for doing computational cognitive phenotyping responsibly.