Research Thread
Scientific Software & Infrastructure
Making computational methods reusable, inspectable, and accessible.
This thread treats software, dashboards, reports, and graphical interfaces as scientific outputs. The work packages analytic methods into tools that collaborators can inspect, reuse, and extend.
Scientific Question
How can methods become shared infrastructure rather than one-off analysis code?
Software
SciDataReportR
An open-source framework for reproducible biomedical data analysis and reporting.
MEAnalyzer
Published, citable, downloadable MATLAB software for multi-electrode array data analysis.
Scientific Reporting Frameworks
Reproducible reporting systems that turn analysis workflows into publication-ready scientific outputs.
Computational Phenotyping Pipelines
Reusable analysis pipelines for latent structure, clustering, and subgroup discovery.Connected Publications
MEAnalyzer-a spike train analysis tool for multi electrode arrays
Neuroinformatics
Introduces MEAnalyzer as reproducible software for spike train analysis in multi-electrode array experiments.
Patterns and predictors of cognitive function among virally suppressed women with HIV
Frontiers in neurology
Uses self-organizing maps and random forests to characterize cognitive profiles in virally suppressed women with HIV.
Development of a refined harmonization approach for longitudinal cognitive data in people with HIV
Journal of Clinical Epidemiology
Related Talks