Scientific Software Ecosystem

Software

Software is treated here as a first-class research output: infrastructure that makes analysis reproducible, visual, inspectable, and useful for translational biomedical research.

MEAnalyzer anchors the software portfolio as a published, citable, downloadable MATLAB application. SciDataReportR extends the research infrastructure toward reproducible biomedical data analysis and reporting. The remaining domain packages and SciDataAgent are marked as in development so the site distinguishes established outputs from active directions.

Published software

MEAnalyzer

Established MATLAB app

A citable and downloadable point-and-click graphical interface for multi-electrode array spike-train analysis, visualization, burst detection, connectivity metrics, and transparent exports.

Core framework

SciDataReportR

Open-source analysis and reporting infrastructure

An open-source framework for reproducible biomedical data analysis and reporting across metadata-aware, quality-controlled, statistical, visual, and biomarker workflows.

Research infrastructure

Computational Phenotyping Pipelines

Hidden structure discovery

Reusable pipelines for machine learning, clustering, subgroup discovery, longitudinal prediction, and interpretable drivers of complex biomedical phenotypes.

Research infrastructure

Dashboards and Reporting Frameworks

Scientific interfaces

Interactive dashboards, reports, and visual systems that help collaborators inspect results, understand assumptions, and share reproducible analyses.

In Development

ProteomicsReportR

Proteomics reporting

Domain-specific reporting workflows for proteomics quality control, biomarker analysis, dimensionality reduction, clustering, and pathway-oriented interpretation.

In Development

MetabolomicsReportR

Metabolomics reporting

Reusable reports for metabolomics studies that connect multi-omics measurements with statistical workflows and biological interpretation.

In Development

MultiPlexReportR

Multiplex biomarker reporting

Analytical reporting infrastructure for multiplex biomarker panels, transparent QC, biomarker discovery, and cross-domain biomedical integration.

In Development

SciDataAgent

Conceptual AI reasoning layer

A conceptual human-in-the-loop assistant for conversational data exploration, scientific reasoning, reproducible analysis planning, and transparent hypothesis generation.